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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10545 and 10546 are separated by 405 nucleotides
10546 and 10547 are separated by 1099 nucleotides
10547 and 10548 are separated by 634 nucleotides
10548 and 10549 are separated by 2058 nucleotides
mRNA_2177: 10545 - Hypothetical Protein, at 264,370 to 265,030
10545
mRNA_2178: 10546 - Hypothetical Protein, at 265,436 to 267,124
10546
mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268,224 to 273,308
10547
mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273,943 to 276,215
10548
mRNA_2181: 10549 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 278,274 to 281,386
10549
Group
Condition
mRNA
_2177
mRNA
_2178
mRNA
_2179
mRNA
_2180
mRNA
_2181
10545
10546
10547
10548
10549
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.1
-0.5
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
-0.2
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.7
+0.5
+0.1
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.2
-0.2
-0.3
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.0
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.0
-0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
+0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.4
+0.3
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.1
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose
+0.0
+0.0
-0.2
+0.2
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
-0.1
+0.1
-0.1
growth on ypd
YPD
+0.1
-0.4
+0.1
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
+0.0
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.0
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.4
+0.0
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
+0.4
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.0
+0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.7
+0.4
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.4
-0.0
+0.4
+0.2
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