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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10546 and 10547 are separated by 1099 nucleotides
10547 and 10548 are separated by 634 nucleotides
10548 and 10549 are separated by 2058 nucleotides
10549 and 10550 are separated by 1348 nucleotides
mRNA_2178: 10546 - Hypothetical Protein, at 265,436 to 267,124
10546
mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268,224 to 273,308
10547
mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273,943 to 276,215
10548
mRNA_2181: 10549 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 278,274 to 281,386
10549
mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282,735 to 284,065
10550
Group
Condition
mRNA
_2178
mRNA
_2179
mRNA
_2180
mRNA
_2181
mRNA
_2182
10546
10547
10548
10549
10550
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
+0.2
-0.3
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.0
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
-0.3
-0.2
+0.2
auxotrophy
Dropout Complete
-0.1
-0.1
+0.1
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
+0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.4
-0.1
-0.1
auxotrophy
YNB Glucose
+0.0
-0.2
+0.2
-0.1
-0.5
growth on ricinoleic acid
YNB Glucose
+0.4
+0.3
-0.2
-0.4
-0.5
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.2
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
-0.1
-0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.1
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.0
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.1
-0.3
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.4
-0.1
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.0
+0.3
-0.1
growth on ypd
YPD
-0.4
+0.1
+0.5
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.0
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.0
-0.1
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
+0.4
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.1
+0.5
+0.0
+0.1
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