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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10547 and 10548 are separated by 634 nucleotides
10548 and 10549 are separated by 2058 nucleotides
10549 and 10550 are separated by 1348 nucleotides
10550 and 10551 are separated by 357 nucleotides
mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268,224 to 273,308
10547
mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273,943 to 276,215
10548
mRNA_2181: 10549 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 278,274 to 281,386
10549
mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282,735 to 284,065
10550
mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284,423 to 286,019
10551
Group
Condition
mRNA
_2179
mRNA
_2180
mRNA
_2181
mRNA
_2182
mRNA
_2183
10547
10548
10549
10550
10551
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
-0.3
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.2
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.3
-0.8
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
-0.4
-0.5
+0.2
auxotrophy
Dropout Complete
-0.1
+0.1
-0.1
-0.6
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.2
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.2
-0.4
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.1
-0.6
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
-0.3
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
-0.3
-0.4
+0.2
auxotrophy
YNB Glucose
-0.2
+0.2
-0.1
-0.5
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.1
-0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.3
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.3
+0.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
+0.2
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
+0.1
+0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.5
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.5
-0.2
+0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.4
+0.2
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
+0.0
+0.1
+0.5
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