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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10551 and 10552 are separated by 216 nucleotides
10552 and 10553 are separated by 768 nucleotides
10553 and 10554 are separated by 1069 nucleotides
10554 and 10555 are separated by 371 nucleotides
mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284,423 to 286,019
10551
mRNA_2184: 10552 - Hypothetical Protein, at 286,236 to 287,917
10552
mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288,686 to 288,844
10553
mRNA_2186: 10554 - K06316 RFT1 oligosaccharide translocation protein RFT1, at 289,914 to 291,585
10554
mRNA_2187: 10555 - K09602 OTUB1 ubiquitin thioesterase protein OTUB1, at 291,957 to 293,217
10555
Group
Condition
mRNA
_2183
mRNA
_2184
mRNA
_2185
mRNA
_2186
mRNA
_2187
10551
10552
10553
10554
10555
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-1.0
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
-0.8
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
-0.4
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.6
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.6
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.4
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.8
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.8
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
-0.3
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
+0.6
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.3
N.D.
+0.4
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.8
N.D.
-0.1
growth on ypd
YPD
+0.1
+0.1
+0.8
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.4
+1.7
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
+1.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+1.5
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.9
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.0
+1.1
N.D.
+0.3
auxotrophy
YNB Glucose
+0.4
-0.2
+1.8
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
-0.2
+2.3
N.D.
-0.0
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