Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10552 and 10553 are separated by 768 nucleotides10553 and 10554 are separated by 1069 nucleotides10554 and 10555 are separated by 371 nucleotides10555 and 10556 are separated by 941 nucleotides mRNA_2184: 10552 - Hypothetical Protein, at 286,236 to 287,917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288,686 to 288,844 10553 mRNA_2186: 10554 - K06316 RFT1 oligosaccharide translocation protein RFT1, at 289,914 to 291,585 10554 mRNA_2187: 10555 - K09602 OTUB1 ubiquitin thioesterase protein OTUB1, at 291,957 to 293,217 10555 mRNA_2188: 10556 - Hypothetical Protein, at 294,159 to 294,788 10556
Group Condition mRNA_2184 mRNA_2185 mRNA_2186 mRNA_2187 mRNA_2188
10552 10553 10554 10555 10556
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -1.0 N.D. -0.4 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.4 -0.8 N.D. -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.8 N.D. +0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.3 -0.4 N.D. +0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.8 N.D. -0.2 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.4 N.D. -0.3 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.5 N.D. +0.0 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.3 N.D. -0.3 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.6 N.D. +0.3 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.6 +0.3 N.D. -0.1 N.D.
growth on ricinoleic acid YNB Glucose +0.1 -0.3 N.D. +0.4 N.D.
growth on oleic acid YNB Oleic Acid +0.0 +0.6 N.D. -0.2 N.D.
growth on ypd YPD +0.1 +0.8 N.D. -0.3 N.D.
growth on oleic acid YNB Glucose -0.1 +0.8 N.D. -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.4 +1.7 N.D. -0.4 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 +1.5 N.D. -0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.9 N.D. +0.3 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +1.0 N.D. +0.2 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 +1.1 N.D. +0.3 N.D.
auxotrophy YNB Glucose -0.2 +1.8 N.D. -0.1 N.D.
auxotrophy Dropout Complete -0.2 +2.3 N.D. -0.0 N.D.
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