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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10556 and 10557 are separated by 1260 nucleotides
10557 and 10558 are separated by 1468 nucleotides
10558 and 10559 are separated by 841 nucleotides
10559 and 10560 are separated by 220 nucleotides
mRNA_2188: 10556 - Hypothetical Protein, at 294,159 to 294,788
10556
mRNA_2189: 10557 - K11236 CDC24 cell division control protein 24, at 296,049 to 299,793
10557
mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301,262 to 303,174
10558
mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304,016 to 306,697
10559
mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071
10560
Group
Condition
mRNA
_2188
mRNA
_2189
mRNA
_2190
mRNA
_2191
mRNA
_2192
10556
10557
10558
10559
10560
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
-0.4
-0.4
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.7
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
-0.0
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+1.0
-0.4
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.8
+0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.9
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+1.2
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+1.1
-0.0
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+1.2
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
N.D.
+1.2
-0.0
+0.1
-0.2
growth on ypd
YPD
N.D.
+0.8
+0.3
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+1.0
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose
N.D.
+1.2
-0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
+0.5
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+2.1
-0.0
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+1.8
+0.3
+0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+2.9
+0.5
-0.1
+0.1
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