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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10558 and 10559 are separated by 841 nucleotides
10559 and 10560 are separated by 220 nucleotides
10560 and 10561 are separated by 148 nucleotides
10561 and 10562 are separated by 487 nucleotides
mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301,262 to 303,174
10558
mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304,016 to 306,697
10559
mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071
10560
mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834
10561
mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107
10562
Group
Condition
mRNA
_2190
mRNA
_2191
mRNA
_2192
mRNA
_2193
mRNA
_2194
10558
10559
10560
10561
10562
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.2
-0.3
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
+0.5
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
+0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
-0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.2
+0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
+0.1
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.1
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.2
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.1
-0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.2
+0.2
+0.1
auxotrophy
Dropout Complete
-0.0
+0.1
-0.2
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
-0.1
+0.6
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.1
+0.0
+0.0
auxotrophy
YNB Glucose
-0.0
+0.1
-0.2
+0.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
+0.1
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
-0.2
+0.2
-0.0
growth on ypd
YPD
+0.3
+0.1
-0.1
+0.6
+0.0
growth on ricinoleic acid
YNB Glucose
+0.5
-0.2
+0.2
+0.2
+0.2
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