Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10558 and 10559 are separated by 841 nucleotides10559 and 10560 are separated by 220 nucleotides10560 and 10561 are separated by 148 nucleotides10561 and 10562 are separated by 487 nucleotides mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301,262 to 303,174 10558 mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304,016 to 306,697 10559 mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071 10560 mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107 10562
Group Condition mRNA_2190 mRNA_2191 mRNA_2192 mRNA_2193 mRNA_2194
10558 10559 10560 10561 10562
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 -0.2 -0.3 -0.2 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.1 +0.0 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.2 -0.1 +0.2 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.4 +0.5 -0.4 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.1 +0.1 -0.1 +0.1
growth on oleic acid YNB Oleic Acid +0.1 -0.1 -0.1 +0.2 -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.4 -0.1 -0.1 +0.3 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.1 -0.2 +0.3 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 -0.3 +0.1 +0.4 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.2 -0.1 +0.3 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.0 +0.2 -0.0 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.3 -0.1 -0.1 +0.0
growth on oleic acid YNB Glucose +0.1 -0.0 -0.2 +0.2 +0.1
auxotrophy Dropout Complete -0.0 +0.1 -0.2 +0.5 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.0 -0.1 +0.6 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.1 +0.1 +0.0 +0.0
auxotrophy YNB Glucose -0.0 +0.1 -0.2 +0.7 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 -0.1 +0.1 +0.3 -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.3 +0.4 -0.2 +0.2 -0.0
growth on ypd YPD +0.3 +0.1 -0.1 +0.6 +0.0
growth on ricinoleic acid YNB Glucose +0.5 -0.2 +0.2 +0.2 +0.2
remove
mRNA_2190
plot
remove
mRNA_2191
plot
remove
mRNA_2192
remove
mRNA_2193
plot
remove
mRNA_2194
plot