Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
10559 and 10560 are separated by 220 nucleotides
10560 and 10561 are separated by 148 nucleotides
10561 and 10562 are separated by 487 nucleotides
10562 and 10563 are separated by 1358 nucleotides
mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304,016 to 306,697
10559
mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071
10560
mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834
10561
mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107
10562
mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008
10563
Group
Condition
mRNA
_2191
mRNA
_2192
mRNA
_2193
mRNA
_2194
mRNA
_2195
10559
10560
10561
10562
10563
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
-0.2
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
-0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.3
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.4
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.0
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.5
-0.4
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
+0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.3
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.0
+0.0
+0.0
growth on oleic acid
YNB Glucose
-0.0
-0.2
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
-0.1
+0.0
+0.1
auxotrophy
Dropout Complete
+0.1
-0.2
+0.5
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.2
+0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.6
-0.1
+0.1
auxotrophy
YNB Glucose
+0.1
-0.2
+0.7
-0.1
+0.1
growth on ypd
YPD
+0.1
-0.1
+0.6
+0.0
+0.0
remove
mRNA_2191
plot
remove
mRNA_2192
plot
remove
mRNA_2193
remove
mRNA_2194
plot
remove
mRNA_2195
plot