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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10560 and 10561 are separated by 148 nucleotides
10561 and 10562 are separated by 487 nucleotides
10562 and 10563 are separated by 1358 nucleotides
10563 and 10564 are separated by 316 nucleotides
mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071
10560
mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834
10561
mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107
10562
mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008
10563
mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120
10564
Group
Condition
mRNA
_2192
mRNA
_2193
mRNA
_2194
mRNA
_2195
mRNA
_2196
10560
10561
10562
10563
10564
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
-0.2
+0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
-0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.2
-0.0
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.1
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.2
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.1
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
-0.1
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.0
-0.2
+0.1
auxotrophy
YNB Glucose
-0.2
+0.7
-0.1
+0.1
-0.4
growth on ypd
YPD
-0.1
+0.6
+0.0
+0.0
-0.4
auxotrophy
Dropout Complete
-0.2
+0.5
-0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+0.0
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-0.3
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.0
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.6
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.1
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.4
+0.3
-0.1
+0.9
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