Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10561 and 10562 are separated by 487 nucleotides10562 and 10563 are separated by 1358 nucleotides10563 and 10564 are separated by 316 nucleotides10564 and 10565 are separated by 775 nucleotides mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107 10562 mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120 10564 mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326,896 to 330,044 10565
Group Condition mRNA_2193 mRNA_2194 mRNA_2195 mRNA_2196 mRNA_2197
10561 10562 10563 10564 10565
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.3 +0.2 +0.2 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.1 -0.1 -0.3 -0.4
growth on oleic acid YNB Glucose +0.2 +0.1 +0.2 -0.4 -0.5
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.0 +0.0 +0.0 -0.6
growth on ricinoleic acid YNB Glucose +0.2 +0.2 -0.2 -0.5 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.1 -0.0 -0.0 -0.1
growth on oleic acid YNB Oleic Acid +0.2 -0.1 +0.1 -0.1 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 +0.3 -0.1 +0.9 -0.9
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.2 +0.1 -0.4 +0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.0 -0.1 +0.1 -0.3
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.0 -0.1 +0.2 -0.1
auxotrophy Dropout Complete +0.5 -0.1 +0.0 +0.0 -0.4
auxotrophy YNB Glucose 75mM Arginine +0.6 -0.1 +0.1 +0.1 -0.7
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 -0.3 -0.0 +0.1 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.0 +0.1 +0.1 +0.1
auxotrophy YNB Glucose +0.7 -0.1 +0.1 -0.4 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.0 -0.2 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.2 -0.0 -0.0 +0.4
growth on ypd YPD +0.6 +0.0 +0.0 -0.4 +0.2
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.0 +0.0 +0.3 +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.1 +0.1 +0.4 -0.4
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