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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10562 and 10563 are separated by 1358 nucleotides
10563 and 10564 are separated by 316 nucleotides
10564 and 10565 are separated by 775 nucleotides
10565 and 10566 are separated by 641 nucleotides
mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107
10562
mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008
10563
mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120
10564
mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326,896 to 330,044
10565
mRNA_2198: 10566 - Hypothetical Protein, at 330,686 to 331,336
10566
Group
Condition
mRNA
_2194
mRNA
_2195
mRNA
_2196
mRNA
_2197
mRNA
_2198
10562
10563
10564
10565
10566
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.1
-0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.1
-0.7
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.4
+0.5
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
+0.0
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.0
-0.1
-0.3
auxotrophy
YNB Glucose
-0.1
+0.1
-0.4
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.2
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.4
-0.4
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-0.5
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.2
-0.1
-0.1
growth on ypd
YPD
+0.0
+0.0
-0.4
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.3
-0.4
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
+0.1
-0.1
+0.2
auxotrophy
Dropout Complete
-0.1
+0.0
+0.0
-0.4
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.4
-0.5
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
-0.0
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.9
-0.9
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
+0.3
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+0.1
+0.1
+0.6
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