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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10565 and 10566 are separated by 641 nucleotides
10566 and 10567 are separated by 591 nucleotides
10567 and 10568 are separated by 243 nucleotides
10568 and 10569 are separated by 236 nucleotides
mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326,896 to 330,044
10565
mRNA_2198: 10566 - Hypothetical Protein, at 330,686 to 331,336
10566
mRNA_2199: 10567 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 331,928 to 335,323
10567
mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335,567 to 339,379
10568
mRNA_2201: 10569 - K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49, at 339,616 to 341,199
10569
Group
Condition
mRNA
_2197
mRNA
_2198
mRNA
_2199
mRNA
_2200
mRNA
_2201
10565
10566
10567
10568
10569
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.7
+0.2
-0.5
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.1
+0.0
-0.8
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.5
-0.1
-1.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.1
-0.7
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.5
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.6
-0.1
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.3
-0.0
+0.2
+0.1
growth on ypd
YPD
+0.2
-0.0
-0.1
-0.4
-0.4
auxotrophy
Dropout Complete
-0.4
+0.5
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.1
-0.9
+0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.5
+0.7
+0.0
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
-0.0
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.0
+0.1
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
+0.1
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose
-0.1
+0.1
+0.0
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.6
-0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.7
+0.0
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
+0.0
+0.6
+0.1
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