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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10568 and 10569 are separated by 236 nucleotides
10569 and 10570 are separated by 318 nucleotides
10570 and 10571 are separated by 321 nucleotides
10571 and 10572 are separated by 267 nucleotides
mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335,567 to 339,379
10568
mRNA_2201: 10569 - K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49, at 339,616 to 341,199
10569
mRNA_2202: 10570 - K00365 uaZ urate oxidase, at 341,518 to 342,881
10570
mRNA_2203: 10571 - K13339 PEX6, PXAAA1 peroxin-6, at 343,203 to 347,570
10571
mRNA_2204: 10572 - K03786 aroQ, qutE 3-dehydroquinate dehydratase II, at 347,838 to 348,942
10572
Group
Condition
mRNA
_2200
mRNA
_2201
mRNA
_2202
mRNA
_2203
mRNA
_2204
10568
10569
10570
10571
10572
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.5
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
-0.1
-0.0
N.D.
-0.1
growth on ypd
YPD
-0.4
-0.4
+0.2
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.6
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.8
-0.1
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.8
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.1
+0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.3
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.2
N.D.
-0.0
auxotrophy
Dropout Complete
-0.3
-0.2
+0.4
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.4
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
+0.4
N.D.
-0.0
auxotrophy
YNB Glucose
+0.2
+0.0
+0.5
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.1
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.8
+0.9
N.D.
-0.2
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