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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10571 and 10572 are separated by 267 nucleotides
10572 and 10573 are separated by 496 nucleotides
10573 and 10574 are separated by 705 nucleotides
10574 and 10575 are separated by 277 nucleotides
mRNA_2203: 10571 - K13339 PEX6, PXAAA1 peroxin-6, at 343,203 to 347,570
10571
mRNA_2204: 10572 - K03786 aroQ, qutE 3-dehydroquinate dehydratase II, at 347,838 to 348,942
10572
mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349,439 to 350,135
10573
mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350,841 to 352,829
10574
mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353,107 to 355,052
10575
Group
Condition
mRNA
_2203
mRNA
_2204
mRNA
_2205
mRNA
_2206
mRNA
_2207
10571
10572
10573
10574
10575
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.0
-0.1
growth on ypd
YPD
N.D.
-0.4
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
N.D.
-0.2
+0.4
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
N.D.
+0.2
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
N.D.
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
-0.3
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
N.D.
-0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
N.D.
+0.2
+0.5
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