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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10572 and 10573 are separated by 496 nucleotides
10573 and 10574 are separated by 705 nucleotides
10574 and 10575 are separated by 277 nucleotides
10575 and 10576 are separated by 238 nucleotides
mRNA_2204: 10572 - K03786 aroQ, qutE 3-dehydroquinate dehydratase II, at 347,838 to 348,942
10572
mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349,439 to 350,135
10573
mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350,841 to 352,829
10574
mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353,107 to 355,052
10575
mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355,291 to 358,512
10576
Group
Condition
mRNA
_2204
mRNA
_2205
mRNA
_2206
mRNA
_2207
mRNA
_2208
10572
10573
10574
10575
10576
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
+0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.1
-0.1
-0.3
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.0
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.1
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.1
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.0
-0.1
-0.3
growth on ypd
YPD
-0.4
N.D.
-0.1
+0.2
+0.2
auxotrophy
Dropout Complete
+0.2
N.D.
+0.2
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.2
+0.4
-0.1
auxotrophy
YNB Glucose
+0.3
N.D.
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.4
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.1
+0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.3
+0.4
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
+0.1
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.2
+0.5
+0.1
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