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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10573 and 10574 are separated by 705 nucleotides
10574 and 10575 are separated by 277 nucleotides
10575 and 10576 are separated by 238 nucleotides
10576 and 10577 are separated by 678 nucleotides
mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349,439 to 350,135
10573
mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350,841 to 352,829
10574
mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353,107 to 355,052
10575
mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355,291 to 358,512
10576
mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359,191 to 363,010
10577
Group
Condition
mRNA
_2205
mRNA
_2206
mRNA
_2207
mRNA
_2208
mRNA
_2209
10573
10574
10575
10576
10577
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.5
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
-0.3
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.2
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.4
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.0
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.1
-0.0
+0.3
auxotrophy
YNB Glucose
N.D.
+0.1
-0.1
-0.1
+0.2
auxotrophy
Dropout Complete
N.D.
+0.2
-0.0
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.4
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.5
-0.0
-0.0
growth on ypd
YPD
N.D.
-0.1
+0.2
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
+0.0
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.5
+0.1
+0.2
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