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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10575 and 10576 are separated by 238 nucleotides
10576 and 10577 are separated by 678 nucleotides
10577 and 10578 are separated by 292 nucleotides
10578 and 10579 are separated by 344 nucleotides
mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353,107 to 355,052
10575
mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355,291 to 358,512
10576
mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359,191 to 363,010
10577
mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363,303 to 367,211
10578
mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367,556 to 370,614
10579
Group
Condition
mRNA
_2207
mRNA
_2208
mRNA
_2209
mRNA
_2210
mRNA
_2211
10575
10576
10577
10578
10579
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.3
-0.4
-2.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
-0.4
-0.0
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
-0.5
+0.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.6
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.2
+0.0
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.2
-0.0
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
+0.0
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
+0.1
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.3
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.0
+0.1
-0.5
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.1
+0.2
-0.5
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.2
+0.2
-0.7
auxotrophy
Dropout Complete
-0.0
-0.3
+0.3
+0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
-0.3
+0.5
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
+0.1
+0.0
+0.6
auxotrophy
YNB Glucose
-0.1
-0.1
+0.2
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
-0.2
+0.6
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.0
-0.0
+0.5
+0.2
growth on ypd
YPD
+0.2
+0.2
+0.0
+0.2
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.1
+0.2
+0.0
+0.7
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