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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10579 and 10580 are separated by 665 nucleotides
10580 and 10581 are separated by 336 nucleotides
10581 and 10582 are separated by 676 nucleotides
10582 and 10583 are separated by 138 nucleotides
mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367,556 to 370,614
10579
mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371,280 to 373,458
10580
mRNA_2213: 10581 - Hypothetical Protein, at 373,795 to 375,886
10581
mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376,563 to 378,868
10582
mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379,007 to 379,807
10583
Group
Condition
mRNA
_2211
mRNA
_2212
mRNA
_2213
mRNA
_2214
mRNA
_2215
10579
10580
10581
10582
10583
auxotrophy
Dropout Complete
-0.6
-2.9
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-3.4
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.5
-3.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose
+0.3
-3.4
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
-0.8
+0.1
N.D.
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-2.2
+0.6
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.5
-1.8
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.8
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-2.3
+0.4
+0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.7
-1.6
+0.3
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-2.0
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-2.1
+0.8
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.1
-0.2
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.1
+0.1
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.5
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.1
+0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.9
+0.6
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.9
+0.1
N.D.
+0.1
growth on ypd
YPD
+0.7
-0.0
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.9
+0.1
N.D.
-0.1
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