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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10582 and 10583 are separated by 138 nucleotides
10583 and 10584 are separated by 367 nucleotides
10584 and 10585 are separated by 794 nucleotides
10585 and 10586 are separated by 152 nucleotides
mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376,563 to 378,868
10582
mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379,007 to 379,807
10583
mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380,175 to 381,550
10584
mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382,345 to 384,541
10585
mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384,694 to 386,223
10586
Group
Condition
mRNA
_2214
mRNA
_2215
mRNA
_2216
mRNA
_2217
mRNA
_2218
10582
10583
10584
10585
10586
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.9
-0.6
-0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.3
-1.0
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.2
-0.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.2
-1.0
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.3
-0.8
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.6
-0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.0
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.4
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
+0.2
-0.2
-0.3
-0.2
auxotrophy
Dropout Complete
N.D.
-0.2
+0.2
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.6
-0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.1
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.2
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
-0.0
-0.3
-0.1
growth on ypd
YPD
N.D.
-0.1
+0.4
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.1
+0.7
-0.1
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