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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10584 and 10585 are separated by 794 nucleotides
10585 and 10586 are separated by 152 nucleotides
10586 and 10587 are separated by 499 nucleotides
10587 and 10588 are separated by 406 nucleotides
mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380,175 to 381,550
10584
mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382,345 to 384,541
10585
mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384,694 to 386,223
10586
mRNA_2219: 10587 - Hypothetical Protein, at 386,723 to 388,300
10587
mRNA_2220: 10588 - K14411 MSI RNA-binding protein Musashi, at 388,707 to 390,951
10588
Group
Condition
mRNA
_2216
mRNA
_2217
mRNA
_2218
mRNA
_2219
mRNA
_2220
10584
10585
10586
10587
10588
growth on oleic acid
YNB Glucose
-1.0
-0.4
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.0
+0.1
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.1
-0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.9
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
+0.1
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.1
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.5
+0.0
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.2
+0.4
-0.2
N.D.
auxotrophy
YNB Glucose
-0.2
-0.3
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.0
+0.1
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
-0.1
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
-0.2
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.8
+0.3
+0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
+0.2
N.D.
auxotrophy
Dropout Complete
+0.2
-0.3
-0.2
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.2
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.2
-0.2
N.D.
growth on ypd
YPD
+0.4
+0.2
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.7
-0.1
+1.2
N.D.
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