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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10588 and 10589 are separated by 281 nucleotides
10589 and 10590 are separated by 249 nucleotides
10590 and 10591 are separated by 122 nucleotides
10591 and 10592 are separated by 291 nucleotides
mRNA_2220: 10588 - K14411 MSI RNA-binding protein Musashi, at 388,707 to 390,951
10588
mRNA_2221: 10589 - KOG0379 Kelch repeat-containing proteins, at 391,233 to 393,813
10589
mRNA_2222: 10590 - K14801 TSR4 pre-rRNA-processing protein TSR4, at 394,063 to 398,428
10590
mRNA_2223: 10591 - Hypothetical Protein, at 398,551 to 400,277
10591
mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400,569 to 403,367
10592
Group
Condition
mRNA
_2220
mRNA
_2221
mRNA
_2222
mRNA
_2223
mRNA
_2224
10588
10589
10590
10591
10592
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
N.D.
-0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
-0.3
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
-0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
N.D.
+0.2
N.D.
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
N.D.
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
N.D.
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose
N.D.
+0.5
N.D.
-0.1
+0.2
growth on ypd
YPD
N.D.
+0.4
N.D.
+0.1
+0.0
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