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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10590 and 10591 are separated by 122 nucleotides
10591 and 10592 are separated by 291 nucleotides
10592 and 10593 are separated by 606 nucleotides
10593 and 10594 are separated by 586 nucleotides
mRNA_2222: 10590 - K14801 TSR4 pre-rRNA-processing protein TSR4, at 394,063 to 398,428
10590
mRNA_2223: 10591 - Hypothetical Protein, at 398,551 to 400,277
10591
mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400,569 to 403,367
10592
mRNA_2225: 10593 - Hypothetical Protein, at 403,974 to 404,899
10593
mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405,486 to 409,218
10594
Group
Condition
mRNA
_2222
mRNA
_2223
mRNA
_2224
mRNA
_2225
mRNA
_2226
10590
10591
10592
10593
10594
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.5
-0.3
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.4
-0.5
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.6
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.4
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.2
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
+0.1
-0.8
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.1
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.0
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.0
-0.0
-0.1
auxotrophy
Dropout Complete
N.D.
-0.3
+0.2
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.1
+0.0
+0.2
growth on ypd
YPD
N.D.
+0.1
+0.0
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.2
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
+0.2
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.2
-0.1
+0.5
auxotrophy
YNB Glucose
N.D.
-0.1
+0.2
+0.2
+0.2
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