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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10592 and 10593 are separated by 606 nucleotides
10593 and 10594 are separated by 586 nucleotides
10594 and 10595 are separated by 123 nucleotides
10595 and 10596 are separated by 131 nucleotides
mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400,569 to 403,367
10592
mRNA_2225: 10593 - Hypothetical Protein, at 403,974 to 404,899
10593
mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405,486 to 409,218
10594
mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409,342 to 412,255
10595
mRNA_2228: 10596 - K14191 DIM1 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase, at 412,387 to 413,949
10596
Group
Condition
mRNA
_2224
mRNA
_2225
mRNA
_2226
mRNA
_2227
mRNA
_2228
10592
10593
10594
10595
10596
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.0
-0.0
-2.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.8
-1.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-0.1
-1.2
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.5
-0.1
-0.7
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.2
-0.9
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
-0.9
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
-0.1
-0.5
N.D.
auxotrophy
Dropout Complete
+0.2
+0.0
+0.0
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.3
-1.2
+1.7
N.D.
auxotrophy
YNB Glucose
+0.2
+0.2
+0.2
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.3
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
+0.3
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
-0.4
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
+0.3
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.5
-0.3
+1.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.4
+0.2
N.D.
growth on ypd
YPD
+0.0
-0.0
-0.2
+1.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.5
+0.4
N.D.
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