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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10593 and 10594 are separated by 586 nucleotides
10594 and 10595 are separated by 123 nucleotides
10595 and 10596 are separated by 131 nucleotides
10596 and 10597 are separated by 2624 nucleotides
mRNA_2225: 10593 - Hypothetical Protein, at 403,974 to 404,899
10593
mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405,486 to 409,218
10594
mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409,342 to 412,255
10595
mRNA_2228: 10596 - K14191 DIM1 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase, at 412,387 to 413,949
10596
mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416,574 to 419,223
10597
Group
Condition
mRNA
_2225
mRNA
_2226
mRNA
_2227
mRNA
_2228
mRNA
_2229
10593
10594
10595
10596
10597
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.8
-1.5
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.0
-2.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.5
-0.1
-0.7
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.5
N.D.
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-1.2
N.D.
+0.1
auxotrophy
Dropout Complete
+0.0
+0.0
-0.7
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
-0.9
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.9
N.D.
+0.1
auxotrophy
YNB Glucose
+0.2
+0.2
-0.6
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.1
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.5
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
+0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
+0.4
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-1.2
+1.7
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.4
+0.2
N.D.
+0.1
growth on ypd
YPD
-0.0
-0.2
+1.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
+1.1
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.3
+1.7
N.D.
+0.4
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