Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10597 and 10598 are separated by 679 nucleotides10598 and 10599 are separated by 345 nucleotides10599 and 10600 are separated by 1811 nucleotides10600 and 10601 are separated by 73 nucleotides mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416,574 to 419,223 10597 mRNA_2230: 10598 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 419,903 to 421,996 10598 mRNA_2231: 10599 - Hypothetical Protein, at 422,342 to 422,815 10599 mRNA_2232: 10600 - Hypothetical Protein, at 424,627 to 425,038 10600 mRNA_2233: 10601 - Hypothetical Protein, at 425,112 to 425,465 10601
Group Condition mRNA_2229 mRNA_2230 mRNA_2231 mRNA_2232 mRNA_2233
10597 10598 10599 10600 10601
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +1.0 N.D. -0.8 -2.1
auxotrophy YNB Glucose 75mM Methionine -0.4 -1.2 N.D. +0.6 -1.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 +1.0 N.D. -1.6 -0.8
growth on oleic acid YNB Oleic Acid -0.1 -0.5 N.D. -0.1 -0.4
growth on ypd YPD -0.1 +0.7 N.D. -0.6 -1.2
growth on ricinoleic acid YNB Glucose +0.6 -0.6 N.D. -0.0 -0.9
auxotrophy YNB Glucose -0.4 -1.1 N.D. +0.2 +0.3
auxotrophy YNB Glucose 75mM Arginine -0.7 -0.3 N.D. +0.5 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.4 N.D. +0.1 -1.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.8 N.D. -0.7 +0.9
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.5 N.D. +0.3 -1.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.3 N.D. -0.4 +0.3
auxotrophy Dropout Complete -0.4 -0.1 N.D. -0.1 +0.7
growth on oleic acid YNB Glucose -0.2 -0.4 N.D. +0.6 +0.4
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 +0.4 N.D. +1.2 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +1.1 N.D. -0.3 +0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.6 N.D. +0.5 -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.1 N.D. +0.5 +0.6
ypd buoyancy 40 hrs High Buoyancy -0.4 +0.5 N.D. -0.2 +1.4
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.8 N.D. +0.4 +0.6
ypd buoyancy 40 hrs Low Buoyancy -0.1 +1.3 N.D. -0.0 +1.3
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