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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10597 and 10598 are separated by 679 nucleotides
10598 and 10599 are separated by 345 nucleotides
10599 and 10600 are separated by 1811 nucleotides
10600 and 10601 are separated by 73 nucleotides
mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416,574 to 419,223
10597
mRNA_2230: 10598 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 419,903 to 421,996
10598
mRNA_2231: 10599 - Hypothetical Protein, at 422,342 to 422,815
10599
mRNA_2232: 10600 - Hypothetical Protein, at 424,627 to 425,038
10600
mRNA_2233: 10601 - Hypothetical Protein, at 425,112 to 425,465
10601
Group
Condition
mRNA
_2229
mRNA
_2230
mRNA
_2231
mRNA
_2232
mRNA
_2233
10597
10598
10599
10600
10601
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+1.0
N.D.
-0.8
-2.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-1.2
N.D.
+0.6
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+1.0
N.D.
-1.6
-0.8
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
N.D.
-0.1
-0.4
growth on ypd
YPD
-0.1
+0.7
N.D.
-0.6
-1.2
growth on ricinoleic acid
YNB Glucose
+0.6
-0.6
N.D.
-0.0
-0.9
auxotrophy
YNB Glucose
-0.4
-1.1
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.3
N.D.
+0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.4
N.D.
+0.1
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.8
N.D.
-0.7
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.5
N.D.
+0.3
-1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
N.D.
-0.4
+0.3
auxotrophy
Dropout Complete
-0.4
-0.1
N.D.
-0.1
+0.7
growth on oleic acid
YNB Glucose
-0.2
-0.4
N.D.
+0.6
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.4
N.D.
+1.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+1.1
N.D.
-0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.6
N.D.
+0.5
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
N.D.
+0.5
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.5
N.D.
-0.2
+1.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.8
N.D.
+0.4
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+1.3
N.D.
-0.0
+1.3
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