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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10601 and 10602 are separated by 2535 nucleotides
10602 and 10603 are separated by 656 nucleotides
10603 and 10604 are separated by 105 nucleotides
10604 and 10605 are separated by 577 nucleotides
mRNA_2233: 10601 - Hypothetical Protein, at 425,112 to 425,465
10601
mRNA_2234: 10602 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 428,001 to 429,735
10602
mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550
10603
mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707
10604
mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613
10605
Group
Condition
mRNA
_2233
mRNA
_2234
mRNA
_2235
mRNA
_2236
mRNA
_2237
10601
10602
10603
10604
10605
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.1
N.D.
-0.6
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
-2.0
-0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
N.D.
-0.4
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
N.D.
-0.6
-0.1
-0.2
growth on ypd
YPD
-1.2
N.D.
-0.7
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
-0.9
N.D.
-0.4
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
N.D.
-1.3
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.3
-0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
N.D.
+0.6
-0.7
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.1
+0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.3
+1.2
-0.5
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
+0.4
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.0
N.D.
+0.7
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
+0.8
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+1.3
N.D.
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
-0.3
-0.2
+0.6
auxotrophy
YNB Glucose
+0.3
N.D.
+0.7
+0.1
-0.3
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.3
-0.2
+0.5
ypd buoyancy
40 hrs High Buoyancy
+1.4
N.D.
-0.3
-0.1
+0.1
auxotrophy
Dropout Complete
+0.7
N.D.
+0.7
-0.1
-0.1
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