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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10602 and 10603 are separated by 656 nucleotides
10603 and 10604 are separated by 105 nucleotides
10604 and 10605 are separated by 577 nucleotides
10605 and 10606 are separated by 137 nucleotides
mRNA_2234: 10602 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 428,001 to 429,735
10602
mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550
10603
mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707
10604
mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613
10605
mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436,751 to 438,235
10606
Group
Condition
mRNA
_2234
mRNA
_2235
mRNA
_2236
mRNA
_2237
mRNA
_2238
10602
10603
10604
10605
10606
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-2.0
-0.4
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.3
-0.7
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.3
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.5
-0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-0.2
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
-0.9
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
-0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.4
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.2
+0.6
-0.5
growth on ypd
YPD
N.D.
-0.7
-0.2
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
-0.7
-0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.2
+0.5
-0.2
auxotrophy
YNB Glucose
N.D.
+0.7
+0.1
-0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+1.2
-0.5
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
-0.2
+0.4
+0.2
auxotrophy
Dropout Complete
N.D.
+0.7
-0.1
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.8
-0.1
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
+0.2
+0.3
+0.3
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