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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10603 and 10604 are separated by 105 nucleotides
10604 and 10605 are separated by 577 nucleotides
10605 and 10606 are separated by 137 nucleotides
10606 and 10607 are separated by 94 nucleotides
mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550
10603
mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707
10604
mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613
10605
mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436,751 to 438,235
10606
mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438,330 to 439,601
10607
Group
Condition
mRNA
_2235
mRNA
_2236
mRNA
_2237
mRNA
_2238
mRNA
_2239
10603
10604
10605
10606
10607
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
-0.2
-0.4
-3.3
facs on lipid accumulation
Sorted No BODIPY Gate
-2.0
-0.4
-0.4
-0.1
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.7
-0.0
+0.1
-2.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.7
-0.4
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.5
-0.4
-0.4
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.4
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.4
+0.3
-0.0
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
+0.6
-0.5
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.3
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
-0.2
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.1
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.9
+0.2
+0.5
auxotrophy
YNB Glucose
+0.7
+0.1
-0.3
-0.0
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.2
+0.2
-0.1
growth on ypd
YPD
-0.7
-0.2
+0.4
+0.0
+0.4
growth on oleic acid
YNB Glucose
+0.3
-0.2
+0.5
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.2
+0.4
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.1
+0.0
+0.3
-0.5
auxotrophy
Dropout Complete
+0.7
-0.1
-0.1
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+1.2
-0.5
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.2
+0.3
+0.3
-0.4
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