Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10603 and 10604 are separated by 105 nucleotides10604 and 10605 are separated by 577 nucleotides10605 and 10606 are separated by 137 nucleotides10606 and 10607 are separated by 94 nucleotides mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550 10603 mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707 10604 mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613 10605 mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436,751 to 438,235 10606 mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438,330 to 439,601 10607
Group Condition mRNA_2235 mRNA_2236 mRNA_2237 mRNA_2238 mRNA_2239
10603 10604 10605 10606 10607
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.2 -0.2 -0.4 -3.3
facs on lipid accumulation Sorted No BODIPY Gate -2.0 -0.4 -0.4 -0.1 -1.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 -0.7 -0.0 +0.1 -2.8
facs on lipid accumulation Sorted Low BODIPY Gate -1.3 -0.7 -0.4 +0.2 -0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 -0.5 -0.4 -0.4 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 -0.3 -0.4 -0.4 -0.1
growth on ricinoleic acid YNB Glucose -0.4 -0.4 +0.3 -0.0 -1.0
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -0.2 +0.6 -0.5 -1.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.3 -0.3 -0.1 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 -0.1 -0.2 +0.2 -0.4
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.1 +0.1 +0.2 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.1 -0.9 +0.2 +0.5
auxotrophy YNB Glucose +0.7 +0.1 -0.3 -0.0 -0.7
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.1 -0.2 +0.2 -0.1
growth on ypd YPD -0.7 -0.2 +0.4 +0.0 +0.4
growth on oleic acid YNB Glucose +0.3 -0.2 +0.5 -0.2 -0.0
growth on oleic acid YNB Oleic Acid +0.4 -0.2 +0.4 +0.2 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.8 -0.1 +0.0 +0.3 -0.5
auxotrophy Dropout Complete +0.7 -0.1 -0.1 +0.3 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 +1.2 -0.5 +0.2 +0.4
auxotrophy YNB Glucose 75mM Methionine +0.7 +0.2 +0.3 +0.3 -0.4
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