Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10605 and 10606 are separated by 137 nucleotides10606 and 10607 are separated by 94 nucleotides10607 and 10608 are separated by 400 nucleotides10608 and 10609 are separated by 492 nucleotides mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613 10605 mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436,751 to 438,235 10606 mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438,330 to 439,601 10607 mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440,002 to 443,977 10608 mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444,470 to 447,596 10609
Group Condition mRNA_2237 mRNA_2238 mRNA_2239 mRNA_2240 mRNA_2241
10605 10606 10607 10608 10609
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.4 -3.3 -1.3 +0.7
facs on lipid accumulation Sorted High BODIPY Gate +0.6 -0.5 -1.1 -0.2 -0.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 +0.1 -2.8 -0.6 +1.5
ypd buoyancy 40 hrs Low Buoyancy -0.3 -0.1 -0.5 -0.3 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.1 -1.3 +0.2 +0.1
auxotrophy YNB Glucose -0.3 -0.0 -0.7 -0.6 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.9 +0.2 +0.5 -0.7 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.2 -0.4 -0.3 -0.1
growth on ricinoleic acid YNB Glucose +0.3 -0.0 -1.0 -0.1 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 -0.4 -0.6 +0.4 +0.5
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 +0.2 +0.4 -0.2 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -0.4 -0.1 +0.1 +0.4
auxotrophy YNB Glucose 75mM Arginine +0.0 +0.3 -0.5 -0.4 +0.3
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.3 -0.4 -0.6 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.2 -0.6 -0.4 +1.1
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.2 -0.1 +0.0 +0.1
auxotrophy Dropout Complete -0.1 +0.3 -0.3 -0.4 +0.6
growth on oleic acid YNB Glucose +0.5 -0.2 -0.0 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.2 -0.4 +0.4 +0.6
growth on ypd YPD +0.4 +0.0 +0.4 -0.2 +0.0
growth on oleic acid YNB Oleic Acid +0.4 +0.2 -0.2 -0.1 +0.5
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