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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10607 and 10608 are separated by 400 nucleotides
10608 and 10609 are separated by 492 nucleotides
10609 and 10610 are separated by 466 nucleotides
10610 and 10611 are separated by 482 nucleotides
mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438,330 to 439,601
10607
mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440,002 to 443,977
10608
mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444,470 to 447,596
10609
mRNA_2242: 10610 - Hypothetical Protein, at 448,063 to 449,685
10610
mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450,168 to 452,098
10611
Group
Condition
mRNA
_2239
mRNA
_2240
mRNA
_2241
mRNA
_2242
mRNA
_2243
10607
10608
10609
10610
10611
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.3
-1.3
+0.7
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.8
-0.6
+1.5
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.2
-0.5
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.3
-0.3
-0.0
-0.3
auxotrophy
YNB Glucose
-0.7
-0.6
+0.3
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.6
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.3
-0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-1.0
-0.1
+0.4
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.4
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
+0.2
+0.1
+0.1
+0.3
auxotrophy
Dropout Complete
-0.3
-0.4
+0.6
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.7
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.1
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.5
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.4
+1.1
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.3
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.4
+0.5
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.4
+0.6
+0.1
+0.0
growth on ypd
YPD
+0.4
-0.2
+0.0
-0.0
+0.6
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