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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10609 and 10610 are separated by 466 nucleotides
10610 and 10611 are separated by 482 nucleotides
10611 and 10612 are separated by 803 nucleotides
10612 and 10613 are separated by 943 nucleotides
mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444,470 to 447,596
10609
mRNA_2242: 10610 - Hypothetical Protein, at 448,063 to 449,685
10610
mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450,168 to 452,098
10611
mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452,902 to 454,246
10612
mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455,190 to 456,884
10613
Group
Condition
mRNA
_2241
mRNA
_2242
mRNA
_2243
mRNA
_2244
mRNA
_2245
10609
10610
10611
10612
10613
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.3
-1.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.0
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose
+0.3
+0.0
-0.2
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.1
-0.9
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
-0.1
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.3
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
+0.1
N.D.
growth on ypd
YPD
+0.0
-0.0
+0.6
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.0
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.3
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.1
+0.0
N.D.
auxotrophy
Dropout Complete
+0.6
-0.2
-0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.3
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.4
-0.3
+0.9
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.0
-0.1
+0.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.1
-0.2
+0.3
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.5
-0.2
-0.0
+1.3
N.D.
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