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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10612 and 10613 are separated by 943 nucleotides
10613 and 10614 are separated by 362 nucleotides
10614 and 10615 are separated by 194 nucleotides
10615 and 10616 are separated by 351 nucleotides
mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452,902 to 454,246
10612
mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455,190 to 456,884
10613
mRNA_2246: 10614 - K00026 MDH2 malate dehydrogenase, at 457,247 to 458,914
10614
mRNA_2247: 10615 - Hypothetical Protein, at 459,109 to 460,029
10615
mRNA_2248: 10616 - K01338 lon ATP-dependent Lon protease, at 460,381 to 463,216
10616
Group
Condition
mRNA
_2244
mRNA
_2245
mRNA
_2246
mRNA
_2247
mRNA
_2248
10612
10613
10614
10615
10616
auxotrophy
YNB Glucose
-0.7
N.D.
-1.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-1.0
+0.0
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-1.5
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-1.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
-0.1
-0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
-0.8
-0.3
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
N.D.
-0.1
+0.6
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
-0.6
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
N.D.
-0.1
+0.2
-0.3
growth on ypd
YPD
-0.5
N.D.
-0.2
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.5
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.3
-0.2
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
-0.4
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.0
N.D.
-1.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+0.4
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
+0.0
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.0
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.9
N.D.
-1.3
-0.1
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
N.D.
-0.2
-0.2
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
N.D.
-0.5
+0.1
+0.9
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