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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10618 and 10619 are separated by 403 nucleotides
10619 and 10620 are separated by 262 nucleotides
10620 and 10621 are separated by 264 nucleotides
10621 and 10622 are separated by 227 nucleotides
mRNA_2250: 10618 - HMMPfam-Apolipoprotein O-PF09769, at 464,729 to 465,798
10618
mRNA_2251: 10619 - KOG3313 Molecular chaperone Prefoldin, subunit 3, at 466,202 to 467,815
10619
mRNA_2252: 10620 - HMMPfam-Signal recognition particle 9 kDa protein (SRP9)-PF05486,SUPERFAMILY--SSF54762, at 468,078 to 468,584
10620
mRNA_2253: 10621 - HMMPfam-Staphylococcal nuclease homologue-PF00565,ProSiteProfiles-Thermonuclease domain profile.-PS50830,SMART-Staphylococcal nuclease homologues-SM00318,SUPERFAMILY--SSF50199, at 468,849 to 469,968
10621
mRNA_2254: 10622 - K17822 DCUN1D1_2 DCN1-like protein 1/2, at 470,196 to 471,391
10622
Group
Condition
mRNA
_2250
mRNA
_2251
mRNA
_2252
mRNA
_2253
mRNA
_2254
10618
10619
10620
10621
10622
growth on oleic acid
YNB Oleic Acid
-0.3
-0.6
N.D.
+0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-1.5
N.D.
-0.5
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.6
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose
-0.0
-0.4
N.D.
+0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
N.D.
+0.4
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.1
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.5
N.D.
+0.2
-0.8
auxotrophy
Dropout Complete
+0.2
-0.1
N.D.
+0.2
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-1.2
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.8
N.D.
+0.0
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.9
N.D.
+0.5
-1.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
N.D.
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.4
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
N.D.
+0.3
-0.1
growth on ypd
YPD
-0.0
+0.6
N.D.
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
N.D.
+0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.6
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
N.D.
-0.0
+0.5
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