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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10635 and 10636 are separated by 81 nucleotides
10636 and 10637 are separated by 568 nucleotides
10637 and 10638 are separated by 455 nucleotides
10638 and 10639 overlap by 2 nucleotides
mRNA_2267: 10635 - K15110 SLC25A21, ODC solute carrier family 25 (mitochondrial 2-oxodicarboxylate transporter), member 21, at 488,523 to 490,039
10635
mRNA_2268: 10636 - K11215 STE12 transcription factor STE12, at 490,121 to 491,043
10636
mRNA_2269: 10637 - Hypothetical Protein, at 491,612 to 491,803
10637
mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492,259 to 494,809
10638
mRNA_2271: 10639 - Hypothetical Protein, at 494,808 to 495,275
10639
Group
Condition
mRNA
_2267
mRNA
_2268
mRNA
_2269
mRNA
_2270
mRNA
_2271
10635
10636
10637
10638
10639
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
N.D.
-3.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.1
N.D.
-0.9
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
-1.5
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
N.D.
-0.8
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
N.D.
-0.7
-0.1
growth on ypd
YPD
-0.1
-0.5
N.D.
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.5
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.0
N.D.
+0.9
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
N.D.
+1.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
N.D.
+0.7
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
N.D.
+1.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.5
+0.0
N.D.
+1.8
-0.2
auxotrophy
YNB Glucose
+0.3
-0.2
N.D.
+1.5
-0.3
auxotrophy
Dropout Complete
+0.4
-0.3
N.D.
+1.6
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
N.D.
+1.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
N.D.
+1.6
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.0
N.D.
+3.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
N.D.
+2.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
N.D.
+3.2
+0.4
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