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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10643 and 10644 are separated by 298 nucleotides
10644 and 10645 are separated by 216 nucleotides
10645 and 10646 are separated by 163 nucleotides
10646 and 10647 are separated by 291 nucleotides
mRNA_2275: 10643 - HMMPfam-MAPEG family-PF01124,SUPERFAMILY--SSF161084, at 500,597 to 501,422
10643
mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501,721 to 502,247
10644
mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502,464 to 504,545
10645
mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504,709 to 506,668
10646
mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506,960 to 510,896
10647
Group
Condition
mRNA
_2275
mRNA
_2276
mRNA
_2277
mRNA
_2278
mRNA
_2279
10643
10644
10645
10646
10647
growth on oleic acid
YNB Glucose
-0.5
N.D.
-0.2
-0.3
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.2
-0.5
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.2
+0.1
-2.2
auxotrophy
YNB Glucose 75mM Arginine
-0.7
N.D.
+0.2
+0.2
-1.9
auxotrophy
Dropout Complete
-0.4
N.D.
+0.2
+0.2
-2.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
+0.0
-1.9
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.2
+0.1
-1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
-0.3
-0.2
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.1
-0.1
-1.2
auxotrophy
YNB Glucose
-0.3
N.D.
+0.1
+0.2
-1.7
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.1
-0.4
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.4
+0.2
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.2
+0.4
-1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
N.D.
-0.4
-0.4
-1.4
growth on ypd
YPD
-0.3
N.D.
+0.1
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
-0.2
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.3
-0.3
-0.9
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.1
+0.5
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.0
+0.5
-0.1
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