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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10645 and 10646 are separated by 163 nucleotides
10646 and 10647 are separated by 291 nucleotides
10647 and 10648 are separated by 482 nucleotides
10648 and 10649 are separated by 232 nucleotides
mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502,464 to 504,545
10645
mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504,709 to 506,668
10646
mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506,960 to 510,896
10647
mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511,379 to 518,850
10648
mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519,083 to 521,393
10649
Group
Condition
mRNA
_2277
mRNA
_2278
mRNA
_2279
mRNA
_2280
mRNA
_2281
10645
10646
10647
10648
10649
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-1.7
N.D.
-2.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
-1.6
N.D.
-2.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-1.2
N.D.
-2.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-1.1
N.D.
-2.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
-1.9
N.D.
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-2.2
N.D.
-1.1
auxotrophy
YNB Glucose
+0.1
+0.2
-1.7
N.D.
-1.6
auxotrophy
Dropout Complete
+0.2
+0.2
-2.2
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.4
-1.4
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-1.9
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
-0.9
N.D.
-1.2
growth on oleic acid
YNB Glucose
-0.2
-0.3
-1.7
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
-1.9
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-1.7
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
-1.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
-0.5
N.D.
+0.2
growth on ypd
YPD
+0.1
-0.6
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
N.D.
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.5
-0.1
N.D.
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.5
+0.0
N.D.
+1.3
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