Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10645 and 10646 are separated by 163 nucleotides10646 and 10647 are separated by 291 nucleotides10647 and 10648 are separated by 482 nucleotides10648 and 10649 are separated by 232 nucleotides mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502,464 to 504,545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504,709 to 506,668 10646 mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506,960 to 510,896 10647 mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511,379 to 518,850 10648 mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519,083 to 521,393 10649
Group Condition mRNA_2277 mRNA_2278 mRNA_2279 mRNA_2280 mRNA_2281
10645 10646 10647 10648 10649
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.5 -1.7 N.D. -2.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 -0.2 -1.6 N.D. -2.4
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.1 -1.2 N.D. -2.5
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.2 -1.1 N.D. -2.3
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.0 -1.9 N.D. -1.7
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.1 -2.2 N.D. -1.1
auxotrophy YNB Glucose +0.1 +0.2 -1.7 N.D. -1.6
auxotrophy Dropout Complete +0.2 +0.2 -2.2 N.D. -1.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 -0.4 -1.4 N.D. -0.5
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.2 -1.9 N.D. -0.8
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.3 -0.9 N.D. -1.2
growth on oleic acid YNB Glucose -0.2 -0.3 -1.7 N.D. +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 +0.4 -1.9 N.D. -0.5
growth on ricinoleic acid YNB Glucose +0.2 +0.1 -1.7 N.D. -0.3
growth on oleic acid YNB Oleic Acid +0.1 -0.4 -1.1 N.D. +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.4 -0.5 N.D. +0.2
growth on ypd YPD +0.1 -0.6 -0.0 N.D. +0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 +0.2 -0.2 N.D. -0.5
ypd buoyancy 40 hrs Median Buoyancy -0.0 +0.1 -0.2 N.D. +0.7
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.5 -0.1 N.D. +0.6
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.5 +0.0 N.D. +1.3
remove
mRNA_2277
plot
remove
mRNA_2278
plot
remove
mRNA_2279
remove
mRNA_2280
plot
remove
mRNA_2281
plot