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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10647 and 10648 are separated by 482 nucleotides
10648 and 10649 are separated by 232 nucleotides
10649 and 10650 are separated by 842 nucleotides
10650 and 10651 are separated by 1636 nucleotides
mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506,960 to 510,896
10647
mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511,379 to 518,850
10648
mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519,083 to 521,393
10649
mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522,236 to 522,967
10650
mRNA_2283: 10651 - KOG1674 Cyclin, at 524,604 to 524,992
10651
Group
Condition
mRNA
_2279
mRNA
_2280
mRNA
_2281
mRNA
_2282
mRNA
_2283
10647
10648
10649
10650
10651
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.6
N.D.
-2.4
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
N.D.
-2.3
-1.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
N.D.
-2.2
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.2
N.D.
-1.1
-0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
N.D.
-2.5
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-1.9
N.D.
-1.7
+0.2
+0.3
auxotrophy
YNB Glucose
-1.7
N.D.
-1.6
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.5
-1.7
-0.1
auxotrophy
Dropout Complete
-2.2
N.D.
-1.0
+0.3
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-1.9
N.D.
-0.8
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.9
N.D.
-0.5
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-1.7
N.D.
-0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
N.D.
-1.2
+0.4
-0.1
growth on oleic acid
YNB Glucose
-1.7
N.D.
+0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
N.D.
-0.5
+0.5
+0.2
growth on ypd
YPD
-0.0
N.D.
+0.0
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-1.1
N.D.
+0.4
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+0.2
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.7
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+1.3
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.6
+0.4
+0.1
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