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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10652 and 10653 are separated by 528 nucleotides
10653 and 10654 are separated by 192 nucleotides
10654 and 10655 are separated by 943 nucleotides
10655 and 10656 are separated by 1316 nucleotides
mRNA_2284: 10652 - Hypothetical Protein, at 525,584 to 526,132
10652
mRNA_2285: 10653 - SUPERFAMILY--SSF53300, at 526,661 to 528,036
10653
mRNA_2286: 10654 - Hypothetical Protein, at 528,229 to 530,268
10654
mRNA_2287: 10655 - KOG3870 Uncharacterized conserved protein, at 531,212 to 533,990
10655
mRNA_2288: 10656 - BLAST CLP1-like protein [Schizophyllum commune H4-8], at 535,307 to 535,861
10656
Group
Condition
mRNA
_2284
mRNA
_2285
mRNA
_2286
mRNA
_2287
mRNA
_2288
10652
10653
10654
10655
10656
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.5
-1.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-1.0
-0.0
N.D.
growth on ypd
YPD
-0.1
+0.0
-0.8
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
-0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.6
-0.0
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.6
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.4
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.6
-0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.2
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.2
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.5
-0.0
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.5
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
+0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
+0.4
+0.2
N.D.
auxotrophy
YNB Glucose
+0.1
+0.5
-0.1
+0.4
N.D.
auxotrophy
Dropout Complete
+0.2
+0.4
+0.2
+0.3
N.D.
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