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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10653 and 10654 are separated by 192 nucleotides
10654 and 10655 are separated by 943 nucleotides
10655 and 10656 are separated by 1316 nucleotides
10656 and 10657 are separated by 212 nucleotides
mRNA_2285: 10653 - SUPERFAMILY--SSF53300, at 526,661 to 528,036
10653
mRNA_2286: 10654 - Hypothetical Protein, at 528,229 to 530,268
10654
mRNA_2287: 10655 - KOG3870 Uncharacterized conserved protein, at 531,212 to 533,990
10655
mRNA_2288: 10656 - BLAST CLP1-like protein [Schizophyllum commune H4-8], at 535,307 to 535,861
10656
mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536,074 to 538,335
10657
Group
Condition
mRNA
_2285
mRNA
_2286
mRNA
_2287
mRNA
_2288
mRNA
_2289
10653
10654
10655
10656
10657
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-1.2
-0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-1.0
-0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
-0.3
N.D.
-0.4
growth on ypd
YPD
+0.0
-0.8
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.4
-0.4
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.6
-0.0
N.D.
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.5
-0.0
+0.0
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.1
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.0
+0.1
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.4
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
+0.2
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.2
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
+0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
+0.0
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.3
N.D.
+0.4
auxotrophy
Dropout Complete
+0.4
+0.2
+0.3
N.D.
+0.2
auxotrophy
YNB Glucose
+0.5
-0.1
+0.4
N.D.
+0.3
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