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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10656 and 10657 are separated by 212 nucleotides
10657 and 10658 are separated by 467 nucleotides
10658 and 10659 are separated by 1041 nucleotides
10659 and 10660 are separated by 520 nucleotides
mRNA_2288: 10656 - BLAST CLP1-like protein [Schizophyllum commune H4-8], at 535,307 to 535,861
10656
mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536,074 to 538,335
10657
mRNA_2290: 10658 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 538,803 to 539,885
10658
mRNA_2291: 10659 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 540,927 to 542,780
10659
mRNA_2292: 10660 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 543,301 to 545,980
10660
Group
Condition
mRNA
_2288
mRNA
_2289
mRNA
_2290
mRNA
_2291
mRNA
_2292
10656
10657
10658
10659
10660
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.3
-0.5
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.7
+0.1
-0.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.0
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
-0.1
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
-0.1
+0.4
-0.1
growth on ypd
YPD
N.D.
-0.5
-0.3
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.0
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.7
-0.3
+0.7
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.4
-0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.2
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.3
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
+0.4
+0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+0.5
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.3
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.3
+1.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
+0.5
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.0
+1.3
+0.1
auxotrophy
YNB Glucose
N.D.
+0.3
+0.5
+0.5
+0.2
auxotrophy
Dropout Complete
N.D.
+0.2
+0.4
+0.7
+0.1
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