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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10659 and 10660 are separated by 520 nucleotides
10660 and 10661 are separated by 161 nucleotides
10661 and 10662 are separated by 162 nucleotides
10662 and 10663 are separated by 123 nucleotides
mRNA_2291: 10659 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 540,927 to 542,780
10659
mRNA_2292: 10660 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 543,301 to 545,980
10660
mRNA_2293: 10661 - BLAST splicing arginine serine-rich 12 [Moesziomyces an..., at 546,142 to 547,358
10661
mRNA_2294: 10662 - KOG4131 Ngg1-interacting factor 3 protein NIF3L1, at 547,521 to 548,816
10662
mRNA_2295: 10663 - BLAST CsbD-like [Xanthophyllomyces dendrorhous], at 548,940 to 549,587
10663
Group
Condition
mRNA
_2291
mRNA
_2292
mRNA
_2293
mRNA
_2294
mRNA
_2295
10659
10660
10661
10662
10663
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.2
-0.3
-0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
-0.1
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.1
-0.3
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
-0.3
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
+0.1
-0.0
+0.1
growth on ypd
YPD
+0.0
+0.2
+0.1
-0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-0.2
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.4
-0.0
+0.5
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.2
-0.4
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.1
-0.2
+0.1
-0.1
auxotrophy
YNB Glucose
+0.5
+0.2
+0.3
-0.2
-0.2
auxotrophy
Dropout Complete
+0.7
+0.1
+0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
-0.5
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.0
+0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.3
+0.1
-0.7
+0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
-0.3
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
-0.1
-0.2
+0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
+0.7
+0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.1
+0.7
+0.8
+0.7
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