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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10662 and 10663 are separated by 123 nucleotides
10663 and 10664 are separated by 77 nucleotides
10664 and 10665 are separated by 689 nucleotides
10665 and 10666 are separated by 208 nucleotides
mRNA_2294: 10662 - KOG4131 Ngg1-interacting factor 3 protein NIF3L1, at 547,521 to 548,816
10662
mRNA_2295: 10663 - BLAST CsbD-like [Xanthophyllomyces dendrorhous], at 548,940 to 549,587
10663
mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549,665 to 551,990
10664
mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552,680 to 555,232
10665
mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555,441 to 556,485
10666
Group
Condition
mRNA
_2294
mRNA
_2295
mRNA
_2296
mRNA
_2297
mRNA
_2298
10662
10663
10664
10665
10666
growth on oleic acid
YNB Glucose
+0.1
-0.3
N.D.
-0.3
-0.5
growth on ypd
YPD
-0.4
-0.3
N.D.
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.1
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose
-0.2
-0.2
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
N.D.
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
N.D.
-0.1
-0.5
auxotrophy
Dropout Complete
-0.0
-0.3
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
N.D.
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.2
N.D.
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.5
N.D.
-0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.7
N.D.
-0.2
+0.4
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