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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10663 and 10664 are separated by 77 nucleotides
10664 and 10665 are separated by 689 nucleotides
10665 and 10666 are separated by 208 nucleotides
10666 and 10667 are separated by 569 nucleotides
mRNA_2295: 10663 - BLAST CsbD-like [Xanthophyllomyces dendrorhous], at 548,940 to 549,587
10663
mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549,665 to 551,990
10664
mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552,680 to 555,232
10665
mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555,441 to 556,485
10666
mRNA_2299: 10667 - Hypothetical Protein, at 557,055 to 559,337
10667
Group
Condition
mRNA
_2295
mRNA
_2296
mRNA
_2297
mRNA
_2298
mRNA
_2299
10663
10664
10665
10666
10667
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.3
-0.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.1
-0.5
+0.0
growth on ypd
YPD
-0.3
N.D.
+0.2
-0.5
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.2
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.3
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.3
-0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
-0.2
+0.1
+0.4
auxotrophy
YNB Glucose
-0.2
N.D.
-0.2
-0.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.3
-0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.3
N.D.
-0.2
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.2
-0.1
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.1
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.1
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
N.D.
-0.2
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.1
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.2
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+0.1
+0.2
+0.5
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