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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10667 and 10668 are separated by 173 nucleotides
10668 and 10669 are separated by 290 nucleotides
10669 and 10670 are separated by 338 nucleotides
10670 and 10671 are separated by 905 nucleotides
mRNA_2299: 10667 - Hypothetical Protein, at 557,055 to 559,337
10667
mRNA_2300: 10668 - Hypothetical Protein, at 559,511 to 559,996
10668
mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560,287 to 562,676
10669
mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563,015 to 564,806
10670
mRNA_2303: 10671 - Hypothetical Protein, at 565,712 to 566,657
10671
Group
Condition
mRNA
_2299
mRNA
_2300
mRNA
_2301
mRNA
_2302
mRNA
_2303
10667
10668
10669
10670
10671
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.8
+0.2
-2.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
-1.4
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.5
-0.9
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
+0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.2
-0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.6
-0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
+0.0
-0.4
-0.4
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.2
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
+0.1
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.3
+0.6
-0.5
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
+0.5
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose
+0.5
-0.1
+0.4
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.3
-0.3
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
-0.4
-0.3
+0.8
growth on ypd
YPD
+0.1
-0.2
+0.1
+0.4
+0.4
auxotrophy
Dropout Complete
+0.5
-0.1
+0.2
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.2
+0.4
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.2
-0.3
-0.0
+0.5
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