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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10669 and 10670 are separated by 338 nucleotides
10670 and 10671 are separated by 905 nucleotides
10671 and 10672 are separated by 388 nucleotides
10672 and 10673 are separated by 218 nucleotides
mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560,287 to 562,676
10669
mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563,015 to 564,806
10670
mRNA_2303: 10671 - Hypothetical Protein, at 565,712 to 566,657
10671
mRNA_2304: 10672 - Hypothetical Protein, at 567,046 to 568,484
10672
mRNA_2305: 10673 - K01082 cysQ, MET22, BPNT1 3'(2'), 5'-bisphosphate nucleotidase, at 568,703 to 570,355
10673
Group
Condition
mRNA
_2301
mRNA
_2302
mRNA
_2303
mRNA
_2304
mRNA
_2305
10669
10670
10671
10672
10673
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.2
-2.0
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.9
-0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
-0.4
-0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
+0.3
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.2
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
-0.5
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.5
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.3
+0.8
-0.3
N.D.
auxotrophy
YNB Glucose
+0.4
-0.4
+0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.0
+0.4
+0.1
N.D.
auxotrophy
Dropout Complete
+0.2
-0.2
+0.4
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
-0.1
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
+0.6
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.0
+0.5
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.2
-0.0
N.D.
growth on ypd
YPD
+0.1
+0.4
+0.4
+0.2
N.D.
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