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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10675 and 10676 are separated by 217 nucleotides
10676 and 10677 are separated by 368 nucleotides
10677 and 10678 are separated by 363 nucleotides
10678 and 10679 are separated by 737 nucleotides
mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572,291 to 573,066
10675
mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573,284 to 575,347
10676
mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575,716 to 577,026
10677
mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577,390 to 579,273
10678
mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580,011 to 582,871
10679
Group
Condition
mRNA
_2307
mRNA
_2308
mRNA
_2309
mRNA
_2310
mRNA
_2311
10675
10676
10677
10678
10679
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
N.D.
-0.5
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
N.D.
-0.3
-1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
N.D.
-0.2
-0.9
auxotrophy
YNB Glucose
+0.1
-0.4
N.D.
-0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
N.D.
+0.4
-0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
N.D.
+0.1
-0.6
auxotrophy
Dropout Complete
-0.1
-0.3
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
N.D.
+0.3
-0.6
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
N.D.
-0.3
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
N.D.
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.3
N.D.
+0.0
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.0
N.D.
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.1
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
N.D.
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
N.D.
+0.4
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
N.D.
+0.0
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.1
+1.3
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