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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10678 and 10679 are separated by 737 nucleotides
10679 and 10680 are separated by 389 nucleotides
10680 and 10681 are separated by 167 nucleotides
10681 and 10682 are separated by 183 nucleotides
mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577,390 to 579,273
10678
mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580,011 to 582,871
10679
mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583,261 to 584,055
10680
mRNA_2313: 10681 - K13343 PEX14 peroxin-14, at 584,223 to 585,492
10681
mRNA_2314: 10682 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 585,676 to 588,935
10682
Group
Condition
mRNA
_2310
mRNA
_2311
mRNA
_2312
mRNA
_2313
mRNA
_2314
10678
10679
10680
10681
10682
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.1
N.D.
N.D.
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-1.2
N.D.
N.D.
-0.6
growth on oleic acid
YNB Oleic Acid
-0.3
-0.6
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.9
N.D.
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.0
-0.8
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
-0.2
-0.5
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.6
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.6
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.7
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
N.D.
N.D.
-0.0
growth on ypd
YPD
-0.3
-0.1
N.D.
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.5
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+1.0
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.3
N.D.
N.D.
-0.2
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