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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10684 and 10685 are separated by 745 nucleotides
10685 and 10686 are separated by 353 nucleotides
10686 and 10687 are separated by 147 nucleotides
10687 and 10688 are separated by 1020 nucleotides
mRNA_2316: 10684 - K02889 RP-L21e, RPL21 large subunit ribosomal protein L21e, at 591,341 to 591,961
10684
mRNA_2317: 10685 - K02264 COX5A cytochrome c oxidase subunit 5a, at 592,707 to 594,114
10685
mRNA_2318: 10686 - HMMPfam-Bromodomain associated-PF07524,HMMPfam-Transcription factor TFIID complex subunit 8 C-term-PF10406, at 594,468 to 595,983
10686
mRNA_2319: 10687 - KOG3872 FOG FHA domain, at 596,131 to 598,966
10687
mRNA_2320: 10688 - HMMPfam-Carboxylesterase family-PF00135,SUPERFAMILY--SSF53474, at 599,987 to 602,471
10688
Group
Condition
mRNA
_2316
mRNA
_2317
mRNA
_2318
mRNA
_2319
mRNA
_2320
10684
10685
10686
10687
10688
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.7
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.6
N.D.
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
-0.2
-0.3
growth on ypd
YPD
N.D.
+0.1
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.0
N.D.
+0.9
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
+1.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.7
N.D.
-0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
N.D.
+0.5
-0.4
growth on oleic acid
YNB Glucose
N.D.
+0.3
N.D.
+0.6
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
N.D.
+0.8
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
N.D.
+1.3
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
N.D.
+0.8
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
N.D.
+1.1
+0.5
auxotrophy
Dropout Complete
N.D.
+0.6
N.D.
+1.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
+1.7
+0.2
auxotrophy
YNB Glucose
N.D.
+0.6
N.D.
+1.4
+0.2
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