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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10688 and 10689 are separated by 1734 nucleotides
10689 and 10690 are separated by 168 nucleotides
10690 and 10691 are separated by 1255 nucleotides
10691 and 10692 are separated by 49 nucleotides
mRNA_2320: 10688 - HMMPfam-Carboxylesterase family-PF00135,SUPERFAMILY--SSF53474, at 599,987 to 602,471
10688
mRNA_2321: 10689 - K14807 DDX51, DBP6 ATP-dependent RNA helicase DDX51/DBP6, at 604,206 to 606,574
10689
mRNA_2322: 10690 - Hypothetical Protein, at 606,743 to 609,720
10690
mRNA_2323: 10691 - Hypothetical Protein, at 610,976 to 611,573
10691
mRNA_2324: 10692 - KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily), at 611,623 to 612,935
10692
Group
Condition
mRNA
_2320
mRNA
_2321
mRNA
_2322
mRNA
_2323
mRNA
_2324
10688
10689
10690
10691
10692
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-2.1
-0.7
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
-0.1
-0.7
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.8
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-1.1
-0.4
+0.1
auxotrophy
Dropout Complete
-0.2
N.D.
-0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.3
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.4
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.3
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose
+0.2
N.D.
-0.2
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.0
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.4
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.1
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.2
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.0
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
-0.1
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+0.3
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-0.4
+0.4
+0.5
growth on ypd
YPD
-0.3
N.D.
-0.3
+0.9
+0.9
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