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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10692 and 10693 are separated by 379 nucleotides
10693 and 10694 are separated by 105 nucleotides
10694 and 10695 are separated by 565 nucleotides
10695 and 10696 are separated by 108 nucleotides
mRNA_2324: 10692 - KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily), at 611,623 to 612,935
10692
mRNA_2325: 10693 - Hypothetical Protein, at 613,315 to 614,433
10693
mRNA_2326: 10694 - K03439 trmB, METTL1 tRNA (guanine-N7-)-methyltransferase, at 614,539 to 615,888
10694
mRNA_2327: 10695 - Hypothetical Protein, at 616,454 to 617,684
10695
mRNA_2328: 10696 - KOG0192 Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs, at 617,793 to 619,842
10696
Group
Condition
mRNA
_2324
mRNA
_2325
mRNA
_2326
mRNA
_2327
mRNA
_2328
10692
10693
10694
10695
10696
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
N.D.
-0.8
+0.0
growth on ypd
YPD
+0.9
-0.5
N.D.
-1.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
N.D.
-0.4
-0.2
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
-0.5
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
-0.3
-0.0
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
N.D.
-0.5
+0.0
growth on oleic acid
YNB Glucose
+0.0
-0.4
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
N.D.
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
-0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
N.D.
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
N.D.
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
N.D.
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
N.D.
-0.6
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.7
N.D.
+0.3
+0.2
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